Downloads

The Clinical PhenoDB software is distributed under the Creative Commons Attribution-NonCommercial-ShareAlike license.


Fill in all fields above and click the 'Submit Registration' button.

Once you have submitted your registration you will be given the link to a page from which you can download the Clinical PhenoDB software, and we will email you the link as well. In addition we will email you when new versions of Clinical PhenoDB are released.

Software Requirements :

Clinical PhenoDB is built on the Django web application framework and uses MySQL as the underlying database. It is designed to run on recent releases of RedHat, Centos and Fedora Core. It requires 40GB of disc space (20GB of that is for the ANNOVAR software) and 8GB of memory.

The distribution is composed of a compressed 'tar' file (1GB) which contains both the Clinical PhenoDB software and all the software tools to run it.

The root directory of the software includes a README.TXT which contains instructions on how to install the software with the included installer, and how to install the software manually should you want a custom installation. You will need to read this file before doing an installation.

If you are upgrading your Clinical PhenoDB installation, you will need to check the VERSIONS.TXT file which contains information on each version of Clinical PhenoDB as well as special instructions on how to upgrade from version to version.

You will need to download the ANNOVAR package from http://annovar.openbioinformatics.org/ to automatically create ANNOVAR files from VCF files. Note that a separate registration is required to obtain this software. Instructions for installing the ANNOVAR package are provided in the top level README.TXT file.